si:ch73-41e3.7 si:ch73-41e3.7 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch73-41e3.7provided by ZNC
Official Full Name: si:ch73-41e3.7provided by ZNC
Primary source: ZFIN:ZDB-GENE-090313-163
See related: Ensembl:ENSDARG00000089799 AllianceGenome:ZFIN:ZDB-GENE-090313-163
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to contribute to siRNA binding activity. Predicted to be involved in regulatory ncRNA-mediated heterochromatin formation. Predicted to be active in nucleus. Orthologous to human ARB2BP (ARB2 family member B, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch73-41e3.7 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (518853..524433, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (523674..529254, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
contributes_to siRNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulatory ncRNA-mediated heterochromatin formation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC572312

Names: protein FAM172A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001145612.1 → NP_001139084.1 uncharacterized protein LOC572312

Status: PREDICTED

Source sequence(s)

CU571081

UniProtKB/TrEMBL

A0A8M6Z6D8, B8JM37

Related

ENSDARP00000114039.1, ENSDART00000147610.2

Conserved Domains (1) summary

pfam09757
Location:55 → 140

Arb2; Arb2 domain