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    tmem106c transmembrane protein 106C [ Danio rerio (zebrafish) ]

    Gene ID: 768153, updated on 9-Dec-2024

    Summary

    Official Symbol
    tmem106cprovided by ZNC
    Official Full Name
    transmembrane protein 106Cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-562
    See related
    Ensembl:ENSDARG00000098105 AllianceGenome:ZFIN:ZDB-GENE-061013-562
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153351
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM106C (transmembrane protein 106C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See tmem106c in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (1323730..1339228, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (1603611..1619109, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate a Neighboring gene glutamate receptor ionotropic, NMDA 2B Neighboring gene NACHT, LRR and PYD domains-containing protein 3 Neighboring gene uncharacterized LOC110438934 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077296.1NP_001070764.1  transmembrane protein 106C

      See identical proteins and their annotated locations for NP_001070764.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124664
      UniProtKB/TrEMBL
      Q08BL5
      Related
      ENSDARP00000131438.1, ENSDART00000172000.2
      Conserved Domains (1) summary
      pfam07092
      Location:25256
      DUF1356; Protein of unknown function (DUF1356)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      1323730..1339228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)