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    tsc22d2 TSC22 domain family 2 [ Danio rerio (zebrafish) ]

    Gene ID: 378875, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tsc22d2provided by ZNC
    Official Full Name
    TSC22 domain family 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031001-12
    See related
    Ensembl:ENSDARG00000041839 AllianceGenome:ZFIN:ZDB-GENE-031001-12
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb869; kiaa0669; zgc:92475; id:ibd5097; wu:fa55e04
    Summary
    Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tsc22d2 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (35204994..35263380)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (35228994..35287631)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 13 Neighboring gene profilin 2b Neighboring gene rubicon autophagy regulator Neighboring gene 5-hydroxytryptamine receptor 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TSC22 domain family protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200109.2 → NP_956403.1  TSC22 domain family protein 2

      See identical proteins and their annotated locations for NP_956403.1

      Status: PROVISIONAL

      Source sequence(s)
      BC131862
      UniProtKB/TrEMBL
      A3KMH6, F6NQG1, Q6TEL2
      Related
      ENSDARP00000061314.6, ENSDART00000061315.8
      Conserved Domains (1) summary
      pfam01166
      Location:466 → 522
      TSC22; TSC-22/dip/bun family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      35204994..35263380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009296501.4 → XP_009294776.1  TSC22 domain family protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A2R8RWC4, A0A8M3B5S8
      Related
      ENSDARP00000154491.1, ENSDART00000189203.1
      Conserved Domains (2) summary
      pfam01166
      Location:487 → 543
      TSC22; TSC-22/dip/bun family
      pfam15265
      Location:135 → 392
      FAM196; FAM196 family
    Nucleotide Protein Strain
    Heading Accession and Version

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