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    fam193b family with sequence similarity 193 member B [ Danio rerio (zebrafish) ]

    Gene ID: 569234, updated on 4-Jan-2025

    Summary

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    Official Symbol
    fam193bprovided by ZNC
    Official Full Name
    family with sequence similarity 193 member Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-111102-1
    See related
    Ensembl:ENSDARG00000102831 AllianceGenome:ZFIN:ZDB-GENE-111102-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be active in cytoplasm and nucleus. Orthologous to human FAM193B (family with sequence similarity 193 member B). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See fam193b in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (49948375..49992417, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (44799153..44844194, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 Neighboring gene abhydrolase domain containing 18 Neighboring gene metal cation symporter ZIP8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular and functional characterization of tilapia DDX41 in IFN regulation. Gan Z, et al. Fish Shellfish Immunol, 2020 Apr. PMID 32081808
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM193B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      49948375..49992417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692607.9 → XP_697699.4  protein FAM193B

      UniProtKB/TrEMBL
      A0A0R4ICN6, A0A8N7TE05
      Related
      ENSDARP00000131503.1, ENSDART00000159988.3
      Conserved Domains (1) summary
      pfam15914
      Location:867 → 915
      FAM193_C; FAM193 family C-terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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