irg1l immunoresponsive gene 1, like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: irg1lprovided by ZNC
Official Full Name: immunoresponsive gene 1, likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-061103-301
See related: Ensembl:ENSDARG00000062788 AllianceGenome:ZFIN:ZDB-GENE-061103-301
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc49d01; wu:fc49d01; zgc:154020
Summary: Predicted to enable aconitate decarboxylase activity. Acts upstream of or within inflammatory response to wounding and response to bacterium. Predicted to be active in mitochondrion. Is expressed in digestive system; head; and male organism. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 14

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (11427052..11430555, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (11121038..11124541, complement)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc49d01 (e-PCR)
- UniSTS:189250

fk37d12.x1 (e-PCR)
- UniSTS:200933

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables aconitate decarboxylase activity	IBA Inferred from Biological aspect of Ancestor more info
enables lyase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in defense response	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within inflammatory response to wounding	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to bacterium	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: immunoresponsive gene 1, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.