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    nudcd3 NudC domain containing 3 [ Danio rerio (zebrafish) ]

    Gene ID: 406472, updated on 9-Dec-2024

    Summary

    Official Symbol
    nudcd3provided by ZNC
    Official Full Name
    NudC domain containing 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2255
    See related
    Ensembl:ENSDARG00000098361 AllianceGenome:ZFIN:ZDB-GENE-040426-2255
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:77067
    Summary
    Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm. Orthologous to human NUDCD3 (NudC domain containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See nudcd3 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (45059797..45070182)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (45213185..45223570)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b Neighboring gene mitochondrial ribosomal protein S24 Neighboring gene calcium/calmodulin-dependent protein kinase type II subunit beta Neighboring gene oxoglutarate dehydrogenase b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables unfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in protein folding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    nudC domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213191.1NP_998356.1  nudC domain-containing protein 3

      See identical proteins and their annotated locations for NP_998356.1

      Status: PROVISIONAL

      Source sequence(s)
      BC065992
      UniProtKB/TrEMBL
      Q6NZR9
      Related
      ENSDARP00000139649.1, ENSDART00000166945.2
      Conserved Domains (2) summary
      cd06495
      Location:167268
      p23_NUDCD3_like; p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
      pfam14050
      Location:1169
      Nudc_N; N-terminal conserved domain of Nudc

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      45059797..45070182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)