U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rclR DNA-binding transcriptional activator RclR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945616, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rclR
    Official Full Name
    DNA-binding transcriptional activator RclR
    Primary source
    ECOCYC:G6175
    Locus tag
    b0305
    See related
    ASAP:ABE-0001054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0304; ykgD
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (320227..321081)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1471 domain-containing protein RclB Neighboring gene cupric reductase RclA Neighboring gene putative lactate utilization oxidoreductase YkgE Neighboring gene putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain Neighboring gene DUF162 domain-containing lactate utilization protein YkgG

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Induction of the reactive chlorine-responsive transcription factor RclR in Escherichia coli following ingestion by neutrophils. Königstorfer A, et al. Pathog Dis, 2021 Jan 9. PMID 33351093, Free PMC Article
    2. Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. Gurvich OL, et al. EMBO J, 2003 Nov 3. PMID 14592990, Free PMC Article
    3. The RclR protein is a reactive chlorine-specific transcription factor in Escherichia coli. Parker BW, et al. J Biol Chem, 2013 Nov 8. PMID 24078635, Free PMC Article
    4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Induction of the reactive chlorine-responsive transcription factor RclR in Escherichia coli following ingestion by neutrophils.
      Title: Induction of the reactive chlorine-responsive transcription factor RclR in Escherichia coli following ingestion by neutrophils.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of organohalogen metabolic process IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding transcriptional activator RclR

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      320227..321081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414839.1 DNA-binding transcriptional activator RclR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414839.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H2V598, A0A192CIB1, A0AA36KUP8, Q1RFN5
      Conserved Domains (2) summary
      COG2207
      Location:162 → 283
      AraC; AraC-type DNA-binding domain and AraC-containing proteins [Transcription]
      cd06995
      Location:2 → 87
      cupin_YkgD-like_N; AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.