U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ycfL DUF1425 domain-containing protein YcfL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948539, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ycfL
    Official Full Name
    DUF1425 domain-containing protein YcfL
    Primary source
    ECOCYC:G6564
    Locus tag
    b1104
    See related
    ASAP:ABE-0003731
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1090
    Summary
    First 18 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG13430].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1162247..1162624)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ferric coprogen/ferric rhodotorulic acid outer membrane transporter Neighboring gene purine nucleoside phosphoramidase Neighboring gene outer membrane lipoprotein - activator of MrcB activity Neighboring gene thiamine kinase Neighboring gene beta-N-acetylglucosaminidase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DUF1425 domain-containing protein YcfL

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1162247..1162624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415622.1 DUF1425 domain-containing protein YcfL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415622.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZT58
      Conserved Domains (1) summary
      COG5633
      Location:1 → 125
      YcfL; Uncharacterized conserved protein YcfL [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.