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    Nop9 NOP9 nucleolar protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290235, updated on 27-Nov-2024

    Summary

    Official Symbol
    Nop9provided by RGD
    Official Full Name
    NOP9 nucleolar proteinprovided by RGD
    Primary source
    RGD:1308396
    See related
    EnsemblRapid:ENSRNOG00000020321 AllianceGenome:RGD:1308396
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308396
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. Predicted to be active in nucleolus. Orthologous to human NOP9 (NOP9 nucleolar protein). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 122.6), Thymus (RPKM 92.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Nop9 in Genome Data Viewer
    Location:
    15p13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (33213786..33222147)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (29243853..29252220)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (34431357..34439861)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase activator subunit 11-2, pseudogene 2 Neighboring gene dehydrogenase/reductase 1 Neighboring gene cell death-inducing DFFA-like effector b Neighboring gene leukotriene B4 receptor 2 Neighboring gene leukotriene B4 receptor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106040.1NP_001099510.1  nucleolar protein 9

      See identical proteins and their annotated locations for NP_001099510.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474049
      UniProtKB/TrEMBL
      A6KH48, D3ZKI9
      Related
      ENSRNOP00000027604.2, ENSRNOT00000027604.5
      Conserved Domains (1) summary
      cl29546
      Location:510598
      Pumilio; Pumilio-family RNA binding domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      33213786..33222147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274131.1XP_063130201.1  nucleolar protein 9 isoform X1