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    SNCF SoxNeuro Co-Factor [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39496, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNCFprovided by FlyBase
    Official Full Name
    SoxNeuro Co-Factorprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036349
    Locus tag
    Dmel_CG14112
    See related
    AllianceGenome:FB:FBgn0036349
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RE54375; CG14112; Dmel\CG14112; HL6; SCNF
    Summary
    Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Colocalizes with nucleolus. Is expressed in several structures, including anterior endoderm anlage; foregut anlage; hindgut anlage; mesoderm; and mesoderm anlage. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See SNCF in Genome Data Viewer
    Location:
    70A7-70A7; 3-40 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (13378583..13379190)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (13371683..13372290)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Neuropeptide-like precursor 2 Neighboring gene antisense RNA:CR45886 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Ecdysone-inducible gene L1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A determinant for directionality of organelle transport in Drosophila embryos. Gross SP, et al. Curr Biol, 2003 Sep 30. PMID 14521831
    2. SNCF, a SoxNeuro interacting protein, defines a novel protein family in Drosophila melanogaster. Bonneaud N, et al. Gene, 2003 Nov 13. PMID 14597169
    3. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. Lott SE, et al. PLoS Biol, 2011 Feb 8. PMID 21346796, Free PMC Article
    4. Identification of genes expressed during Drosophila melanogaster gastrulation by using subtractive hybridization. González-Agüero M, et al. Gene, 2005 Jan 31. PMID 15716118
    5. The atypical cadherin fat directly regulates mitochondrial function and metabolic state. Sing A, et al. Cell, 2014 Sep 11. PMID 25215488

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SoxNeuro Co-Factor
    Names
    CG14112-PA
    SNCF-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      13378583..13379190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140378.3 → NP_648635.1  SoxNeuro Co-Factor [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648635.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VU59
      Related
      FBpp0075576
      Conserved Domains (1) summary
      pfam05306
      Location:52 → 138
      DUF733; Protein of unknown function (DUF733)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VU59 Q9VU59

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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