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    Trappc10 trafficking protein particle complex subunit 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309678, updated on 27-Nov-2024

    Summary

    Official Symbol
    Trappc10provided by RGD
    Official Full Name
    trafficking protein particle complex subunit 10provided by RGD
    Primary source
    RGD:1311263
    See related
    EnsemblRapid:ENSRNOG00000023210 AllianceGenome:RGD:1311263
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tmem1
    Summary
    Predicted to be involved in early endosome to Golgi transport and intra-Golgi vesicle-mediated transport. Predicted to be located in cytosol. Predicted to be part of TRAPPII protein complex. Orthologous to human TRAPPC10 (trafficking protein particle complex subunit 10). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 124.5), Adrenal (RPKM 120.7) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Trappc10 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (10438404..10498740)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (10438737..10499074)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (11168298..11228634)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120098853 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene PWP2, small subunit processome component Neighboring gene glutamine amidotransferase class 1 domain containing 3A

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in early endosome to Golgi transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in intra-Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of TRAPP complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of TRAPPII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    trafficking protein particle complex subunit 10
    Names
    trafficking protein particle complex 10
    transmembrane protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173528.1NP_001166999.1  trafficking protein particle complex subunit 10

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      A0A8I6GJ45, F1MAQ4
      Related
      ENSRNOP00000030074.3, ENSRNOT00000032240.6
      Conserved Domains (2) summary
      pfam11817
      Location:459548
      Foie-gras_1; Foie gras liver health family 1
      pfam12584
      Location:10181246
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      10438404..10498740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)