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    Cfap299 cilia and flagella associated protein 299 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685158, updated on 27-Nov-2024

    Summary

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    Symbol
    Cfap299provided by RGD
    Full Name
    cilia and flagella associated protein 299provided by RGD
    Primary source
    RGD:1597725
    See related
    EnsemblRapid:ENSRNOG00000067409 AllianceGenome:RGD:1597725
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytoplasm. Orthologous to human CFAP299 (cilia and flagella associated protein 299). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 91.3) and Lung (RPKM 17.5) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cfap299 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (11091314..11576981, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (10787191..11272894, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (12437350..12921997, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481716 Neighboring gene protein kinase cGMP-dependent 2 Neighboring gene bone morphogenetic protein 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ribosomal protein S3a, pseudogene 3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene fibroblast growth factor 5 Neighboring gene PR/SET domain 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Cloning of a new testis-enriched gene C4orf22 and its role in cell cycle and apoptosis in mouse spermatogenic cells. Li H, et al. Mol Biol Rep, 2019 Apr. PMID 30820741

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cilia and flagella associated protein 299; cilia- and flagella-associated protein 299
    Names
    uncharacterized protein C4orf22 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432873.1 → NP_001419802.1  cilia and flagella associated protein 299

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I5ZT97

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      11091314..11576981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039092653.2 → XP_038948581.1  cilia- and flagella-associated protein 299 isoform X1

      Related
      ENSRNOP00000100394.1, ENSRNOT00000171179.1
      Conserved Domains (1) summary
      pfam14713
      Location:13 → 232
      DUF4464; Domain of unknown function (DUF4464)

    2. XM_039092654.2 → XP_038948582.1  cilia- and flagella-associated protein 299 isoform X2

      Conserved Domains (1) summary
      pfam14713
      Location:13 → 158
      DUF4464; Domain of unknown function (DUF4464)
    Nucleotide Protein Strain
    Heading Accession and Version

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