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    Tekt5l1 tektin 5 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309300, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tekt5l1provided by RGD
    Official Full Name
    tektin 5 like 1provided by RGD
    Primary source
    RGD:1565057
    See related
    AllianceGenome:RGD:1565057
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565057
    Summary
    Predicted to be involved in cilium assembly and flagellated sperm motility. Predicted to be located in microtubule cytoskeleton and motile cilium. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Tekt5l1 in Genome Data Viewer
    Location:
    1q52
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (236103061..236118680, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (226689519..226705125, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (247094538..247110187, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 6-like Neighboring gene phospholipid phosphatase 6 Neighboring gene phytanoyl-CoA 2-hydroxylase, pseudogene 1 Neighboring gene cell division cycle 37-like 1 Neighboring gene adenylate kinase 3 Neighboring gene uncharacterized LOC120100015

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cilium movement involved in cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in flagellated sperm motility IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in microtubule cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in sperm flagellum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in sperm flagellum IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    similar to hypothetical protein FLJ32871
    Names
    tektin-5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402563.1 → NP_001389492.1  similar to hypothetical protein FLJ32871

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AFC0
      Conserved Domains (1) summary
      pfam03148
      Location:93 → 338
      Tektin; Tektin family

    2. NM_001402564.1 → NP_001389493.1  similar to hypothetical protein FLJ32871

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AFC0
      Conserved Domains (1) summary
      pfam03148
      Location:93 → 338
      Tektin; Tektin family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      236103061..236118680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063264501.1 → XP_063120571.1  similar to hypothetical protein FLJ32871 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AFC0

    2. XM_063264505.1 → XP_063120575.1  similar to hypothetical protein FLJ32871 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AFC0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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