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    Smim19 small integral membrane protein 19 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100362321, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Smim19provided by RGD
    Official Full Name
    small integral membrane protein 19provided by RGD
    Primary source
    RGD:2318364
    See related
    EnsemblRapid:ENSRNOG00000024930 AllianceGenome:RGD:2318364
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human SMIM19 (small integral membrane protein 19). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 141.7), Muscle (RPKM 126.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Smim19 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (76245838..76266786)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (69551507..69564323)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (74408085..74422070)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion channel 3 like 1 Neighboring gene voltage-dependent anion channel 3 Neighboring gene solute carrier family 20 member 2 Neighboring gene uncharacterized LOC120097400 Neighboring gene mitochondrial ribosomal protein S31 Neighboring gene uncharacterized LOC120097532 Neighboring gene solute carrier family 25 member 15 Neighboring gene lncRNA derived from hepatocytes

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    small integral membrane protein 19
    Names
    rCG43335-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399377.1 → NP_001386306.1  small integral membrane protein 19

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A6IW71
      Related
      ENSRNOP00000031728.7, ENSRNOT00000036506.8
      Conserved Domains (1) summary
      pfam15117
      Location:10 → 107
      UPF0697; Uncharacterized protein family UPF0697

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      76245838..76266786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274967.1 → XP_063131037.1  small integral membrane protein 19 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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