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    Pced1b PC-esterase domain containing 1B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315283, updated on 27-Nov-2024

    Summary

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    Symbol
    Pced1bprovided by RGD
    Full Name
    PC-esterase domain containing 1Bprovided by RGD
    Primary source
    RGD:1561028
    See related
    EnsemblRapid:ENSRNOG00000022807 AllianceGenome:RGD:1561028
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam113b; RGD1561028
    Summary
    Orthologous to human PCED1B (PC-esterase domain containing 1B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 56.1), Adrenal (RPKM 40.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pced1b in Genome Data Viewer
    Location:
    7q36
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (130273531..130451727)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (128394388..128528231)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (138707426..138846127)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479611 Neighboring gene uncharacterized LOC134479563 Neighboring gene adhesion molecule with Ig like domain 2 Neighboring gene uncharacterized LOC134479567 Neighboring gene basic transcription factor 3, pseudogene 7 Neighboring gene uncharacterized LOC134479782 Neighboring gene tumor protein, translationally-controlled 1 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC124719

    General protein information

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    Preferred Names
    PC-esterase domain-containing protein 1B
    Names
    family with sequence similarity 113, member B
    protein FAM113B
    translation initiation factor IF-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039454.1 → NP_001034543.1  PC-esterase domain-containing protein 1B

      See identical proteins and their annotated locations for NP_001034543.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112322
      UniProtKB/Swiss-Prot
      Q2M1K5
      Related
      ENSRNOP00000035198.4, ENSRNOT00000037874.7
      Conserved Domains (1) summary
      cl01053
      Location:17 → 253
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      130273531..130451727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063263660.1 → XP_063119730.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5
      Related
      ENSRNOP00000101099.1, ENSRNOT00000145269.1

    2. XM_008765740.4 → XP_008763962.1  PC-esterase domain-containing protein 1B isoform X3

      See identical proteins and their annotated locations for XP_008763962.1

      UniProtKB/Swiss-Prot
      Q2M1K5
      Related
      ENSRNOP00000009199.3, ENSRNOT00000009199.5
      Conserved Domains (1) summary
      cl01053
      Location:17 → 253
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...

    3. XM_063263661.1 → XP_063119731.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5

    4. XM_063263662.1 → XP_063119732.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5

    5. XM_063263668.1 → XP_063119738.1  PC-esterase domain-containing protein 1B isoform X4

    6. XM_063263663.1 → XP_063119733.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5
      Related
      ENSRNOP00000092537.1, ENSRNOT00000110065.2

    7. XM_063263665.1 → XP_063119735.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5

    8. XM_063263666.1 → XP_063119736.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5

    9. XM_063263667.1 → XP_063119737.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5

    10. XM_008765737.3 → XP_008763959.1  PC-esterase domain-containing protein 1B isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y736
      Conserved Domains (1) summary
      cl01053
      Location:79 → 315
      SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...

    11. XM_008765738.3 → XP_008763960.1  PC-esterase domain-containing protein 1B isoform X2

      Conserved Domains (1) summary
      cl01053
      Location:78 → 314
      SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...

    12. XM_008765742.4 → XP_008763964.1  PC-esterase domain-containing protein 1B isoform X3

      See identical proteins and their annotated locations for XP_008763964.1

      UniProtKB/Swiss-Prot
      Q2M1K5
      Related
      ENSRNOP00000097051.1, ENSRNOT00000105071.2
      Conserved Domains (1) summary
      cl01053
      Location:17 → 253
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...

    13. XM_063263664.1 → XP_063119734.1  PC-esterase domain-containing protein 1B isoform X3

      UniProtKB/Swiss-Prot
      Q2M1K5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2M1K5.1 GenPept UniProtKB/Swiss-Prot:Q2M1K5

    Gene LinkOut

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