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    GH9B12 glycosyl hydrolase 9B12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819065, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9B12
    Official Full Name
    glycosyl hydrolase 9B12
    Primary source
    TAIR:AT2G44570
    Locus tag
    AT2G44570
    See related
    Araport:AT2G44570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9B12; F16B22.6; glycosyl hydrolase 9B12
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    Genomic context

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    See GH9B12 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (18394196..18396337, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase 9B10 Neighboring gene glycosyl hydrolase 9B11 Neighboring gene RING/U-box superfamily protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337091.1
    NM_130021.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9B12
    NP_181985.1
    • glycosyl hydrolase 9B12 (GH9B12); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B9 (TAIR:AT2G44540.1); Has 1880 Blast hits to 1860 proteins in 272 species: Archae - 2; Bacteria - 716; Metazoa - 181; Fungi - 17; Plants - 918; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18394196..18396337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130021.3 → NP_181985.1  glycosyl hydrolase 9B12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181985.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80497
      UniProtKB/TrEMBL
      A0A178VY85, A0A5S9X7A3, A0A654FCG5, A0A7G2EHD0
      Conserved Domains (1) summary
      PLN00119
      Location:1 → 492
      PLN00119; endoglucanase

    2. NM_001337091.1 → NP_001323910.1  glycosyl hydrolase 9B12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYH8, Q0WP30
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80497.1

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