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    LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817672, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LSH3
    Official Full Name
    LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
    Primary source
    TAIR:AT2G31160
    Locus tag
    AT2G31160
    See related
    Araport:AT2G31160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LIGHT SENSITIVE HYPOCOTYLS 3; OBO1; ORGAN BOUNDARY 1; T16B12.3; T16B12_3
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    Genomic context

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    See LSH3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (13277710..13279498)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene uncharacterized protein Neighboring gene ATP binding / ATPase Neighboring gene Cysteinyl-tRNA synthetase, class Ia family protein Neighboring gene myb domain protein 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organ boundary1 defines a gene expressed at the junction between the shoot apical meristem and lateral organs. Cho E, et al. Proc Natl Acad Sci U S A, 2011 Feb 1. PMID 21245300, Free PMC Article
    2. CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells. Takeda S, et al. Plant J, 2011 Jun. PMID 21435050
    3. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CUC1 directly activates transcription of the nuclear factor genes LSH4 and LSH3, which may suppress organ differentiation in the boundary region.
      Title: CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128672.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in maintenance of shoot apical meristem identity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in organ boundary specification between lateral organs and the meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in petal development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in post-embryonic plant morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in specification of petal number IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
    NP_565716.1
    • LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13277710..13279498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128672.2 → NP_565716.1  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565716.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82268
      UniProtKB/TrEMBL
      A0A178W2L5, A0A5S9X2T7, A0A654F2V2
      Conserved Domains (1) summary
      pfam04852
      Location:54 → 167
      DUF640; Protein of unknown function (DUF640)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82268.1

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