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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816599, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G20710
    Locus tag
    AT2G20710
    See related
    Araport:AT2G20710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5H14.32; F5H14_32
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (8925926..8927844)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene lumazine-binding family protein Neighboring gene LORELEI-LIKE-GPI ANCHORED PROTEIN 2 Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127635.4
    NM_201763.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_179663.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 11752 Blast hits to 6161 proteins in 167 species: Archae - 2; Bacteria - 8; Metazoa - 34; Fungi - 49; Plants - 11475; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
    NP_973492.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8925926..8927844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127635.4 → NP_179663.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179663.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBX7, Q9SKU6
      UniProtKB/TrEMBL
      A0A178VRG7, A0A5S9WZP3, A0A654EW82, A0A7G2E7S6
      Conserved Domains (4) summary
      PLN03077
      Location:110 → 208
      PLN03077; Protein ECB2; Provisional
      COG0457
      Location:223 → 465
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00004
      Location:142 → 168
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:177 → 219
      PPR_2; PPR repeat family

    2. NM_201763.2 → NP_973492.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973492.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNC2
      Conserved Domains (4) summary
      COG0457
      Location:128 → 368
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00756
      Location:82 → 114
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:47 → 73
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:82 → 124
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SKU6.1

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