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    PSS1 phosphatidyl serine synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838074, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSS1
    Official Full Name
    phosphatidyl serine synthase family protein
    Primary source
    TAIR:AT1G15110
    Locus tag
    AT1G15110
    See related
    Araport:AT1G15110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPSS1; F9L1.4; F9L1_4; phosphatidylserine synthase 1
    Summary
    PSS1 encodes a base-exchange-type Phosphatidylserine (PS) synthase. Mutant analysis revealed its role in pollen maturation.
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    Genomic context

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    See PSS1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (5198940..5202315)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene RING-H2 finger A2A Neighboring gene Ubiquinol-cytochrome C reductase hinge protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Endosomal targeting BRO1-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phosphatidylserine synthase 1 is required for inflorescence meristem and organ development in Arabidopsis. Liu C, et al. J Integr Plant Biol, 2013 Aug. PMID 23931744
    2. PHOSPHATIDYLSERINE SYNTHASE1 is required for microspore development in Arabidopsis thaliana. Yamaoka Y, et al. Plant J, 2011 Aug. PMID 21554450
    3. Arabidopsis Novel Glycine-Rich Plasma Membrane PSS1 Protein Enhances Disease Resistance in Transgenic Soybean Plants. Wang B, et al. Plant Physiol, 2018 Jan. PMID 29101280, Free PMC Article
    4. The kinesin AtPSS1 promotes synapsis and is required for proper crossover distribution in meiosis. Duroc Y, et al. PLoS Genet, 2014 Oct. PMID 25330379, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PSS1 is induced following P. sojae infection as well as expressed in an organ-specific manner.
      Title: Arabidopsis Novel Glycine-Rich Plasma Membrane PSS1 Protein Enhances Disease Resistance in Transgenic Soybean Plants.
    2. Has essential roles in inflorescence meristem maintenance through the WUS-CLV pathway, and in leaf and internode development by differentially regulating the class I KNOX genes
      Title: Phosphatidylserine synthase 1 is required for inflorescence meristem and organ development in Arabidopsis.
    3. PHOSPHATIDYLSERINE SYNTHASE1 (PSS1) is required for Phosphatidylserine biosynthesis in Arabidopsis. PSS1 plays an important role in microspore maturation.
      Title: PHOSPHATIDYLSERINE SYNTHASE1 is required for microspore development in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084071.1
    NM_001332149.1
    NM_001332150.1
    NM_101379.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables CDP-diacylglycerol-serine O-phosphatidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables L-serine-phosphatidylethanolamine phosphatidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in microsporogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in phosphatidylethanolamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in phosphatidylserine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within phosphatidylserine biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nuclear membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidyl serine synthase family protein
    NP_001077540.1
    • phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 335 Blast hits to 331 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 10; Plants - 65; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    NP_172963.3
    • phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 329 Blast hits to 325 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 10; Plants - 65; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5198940..5202315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101379.5 → NP_172963.3  phosphatidyl serine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172963.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HXY7, Q9XI59
      UniProtKB/TrEMBL
      A0A178WK00
      Conserved Domains (1) summary
      PLN02930
      Location:37 → 389
      PLN02930; CDP-diacylglycerol-serine O-phosphatidyltransferase

    2. NM_001332149.1 → NP_001322772.1  phosphatidyl serine synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HXY7, Q9XI59
      UniProtKB/TrEMBL
      A0A178WK00
      Conserved Domains (1) summary
      PLN02930
      Location:37 → 389
      PLN02930; CDP-diacylglycerol-serine O-phosphatidyltransferase

    3. NM_001084071.1 → NP_001077540.1  phosphatidyl serine synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077540.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EC20, C0Z3I3, F4HXY6
      Conserved Domains (1) summary
      PLN02930
      Location:37 → 384
      PLN02930; CDP-diacylglycerol-serine O-phosphatidyltransferase

    4. NM_001332150.1 → NP_001322771.1  phosphatidyl serine synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HXY7, Q9XI59
      UniProtKB/TrEMBL
      A0A178WK00
      Conserved Domains (1) summary
      PLN02930
      Location:37 → 389
      PLN02930; CDP-diacylglycerol-serine O-phosphatidyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HXY7.1

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