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    Scorpion toxin-like knottin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841163, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Scorpion toxin-like knottin superfamily protein
    Primary source
    TAIR:AT1G47540
    Locus tag
    AT1G47540
    See related
    Araport:AT1G47540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16N3.19; F16N3_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (17455533..17456186, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene MATE efflux family protein Neighboring gene exocyst complex component sec3A Neighboring gene exocyst complex component sec3B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_103647.5
    NM_202256.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sodium channel inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Scorpion toxin-like knottin superfamily protein
    NP_175185.1
    • Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor protein 2 (TAIR:AT2G43520.1); Has 146 Blast hits to 146 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_973985.1
    • Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: trypsin inhibitor protein 2 (TAIR:AT2G43520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17455533..17456186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202256.2 → NP_973985.1  Scorpion toxin-like knottin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973985.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HTA0
      Conserved Domains (1) summary
      pfam00537
      Location:29 → 91
      Toxin_3; Scorpion toxin-like domain

    2. NM_103647.5 → NP_175185.1  Scorpion toxin-like knottin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175185.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42330, Q9SX84
      UniProtKB/TrEMBL
      A0A5S9WJU0, A0A654EH31
      Conserved Domains (1) summary
      pfam00537
      Location:28 → 90
      Toxin_3; Scorpion toxin-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42330.2

    Gene LinkOut

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