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    PGM phosphoglycerate/bisphosphoglycerate mutase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844140, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PGM
    Official Full Name
    phosphoglycerate/bisphosphoglycerate mutase
    Primary source
    TAIR:AT1G78050
    Locus tag
    AT1G78050
    See related
    Araport:AT1G78050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28K19.30; F28K19_30; phosphoglycerate/bisphosphoglycerate mutase; PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE
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    Genomic context

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    See PGM in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (29347581..29349755)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene Glycosyl hydrolase family protein Neighboring gene ncRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nitrite acts as a transcriptome signal at micromolar concentrations in Arabidopsis roots. Wang R, et al. Plant Physiol, 2007 Dec. PMID 17951451, Free PMC Article
    2. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Wang R, et al. Plant Physiol, 2004 Sep. PMID 15333754, Free PMC Article
    3. Mutations in leaf starch metabolism modulate the diurnal root growth profiles of Arabidopsis thaliana. Yazdanbakhsh N, et al. Plant Signal Behav, 2011 Jul. PMID 21691153, Free PMC Article
    4. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106454.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to nitrate IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to nitrate IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to nitrite IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    phosphoglycerate/bisphosphoglycerate mutase
    NP_177928.2
    • phosphoglycerate/bisphosphoglycerate mutase (PGM); FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, catalytic activity; INVOLVED IN: response to nitrate, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345), Phosphoglycerate mutase 1 (InterPro:IPR005952); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G22170.1); Has 11796 Blast hits to 11695 proteins in 2243 species: Archae - 59; Bacteria - 8243; Metazoa - 598; Fungi - 291; Plants - 140; Viruses - 0; Other Eukaryotes - 2465 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29347581..29349755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106454.4 → NP_177928.2  phosphoglycerate/bisphosphoglycerate mutase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177928.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I8M8, Q8GX43, Q9SGZ6
      UniProtKB/TrEMBL
      A0A178WMJ7
      Conserved Domains (1) summary
      cl11399
      Location:79 → 306
      HP; Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I8M8.1

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