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    PFC1 Ribosomal RNA adenine dimethylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839283, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PFC1
    Official Full Name
    Ribosomal RNA adenine dimethylase family protein
    Primary source
    TAIR:AT1G01860
    Locus tag
    AT1G01860
    See related
    Araport:AT1G01860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DIMETHYLADENOSINE TRANSFERASE; PALEFACE 1
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    Genomic context

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    See PFC1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (304133..306310, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene AP2-like ethylene-responsive transcription factor SNZ Neighboring gene ncRNA Neighboring gene tRNA-Val Neighboring gene 5'-3' exonuclease family protein Neighboring gene tRNA-Lys

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast development at low temperatures requires a homolog of DIM1, a yeast gene encoding the 18S rRNA dimethylase. Tokuhisa JG, et al. Plant Cell, 1998 May. PMID 9596631, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001331308.1
    NM_001331309.1
    NM_001331310.1
    NM_001331311.1
    NM_100068.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal RNA adenine dimethylase family protein
    NP_171690.1
    • PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228; Bacteria - 6144; Metazoa - 264; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      304133..306310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100068.3 → NP_171690.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171690.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65090, Q9LPD3, Q9LQ70
      UniProtKB/TrEMBL
      A0A5S9S3F4, A0A654E5Z7
      Conserved Domains (1) summary
      PRK00274
      Location:59 → 342
      ksgA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA

    2. NM_001331308.1 → NP_001322242.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQU2, A0A1P8ATD9, A0A384KQI9

    3. NM_001331310.1 → NP_001322240.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMV6, A0A1P8ATE0, A0A384L9Y3
      Conserved Domains (1) summary
      COG0030
      Location:71 → 316
      RsmA; 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]

    4. NM_001331309.1 → NP_001322241.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV1, A0A1P8ATE1, A0A384LPN0

    5. NM_001331311.1 → NP_001322239.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATD7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65090.1

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