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    IBS1 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838448, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IBS1
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT1G18670
    Locus tag
    AT1G18670
    See related
    Araport:AT1G18670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6A14.22; F6A14_22; IMPAIRED IN BABA-INDUCED STERILITY 1
    Summary
    Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.
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    Genomic context

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    See IBS1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (6426709..6431093, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 6 Neighboring gene 3-phosphoserine phosphatase Neighboring gene plasmodesmata callose-binding protein 3 Neighboring gene zinc finger (C3HC4-type RING finger) family protein Neighboring gene HNH endonuclease domain-containing protein Neighboring gene Galactosyl transferase GMA12/MNN10 family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Descendants of primed Arabidopsis plants exhibit resistance to biotic stress. Slaughter A, et al. Plant Physiol, 2012 Feb. PMID 22209872, Free PMC Article
    2. Dissecting the beta-aminobutyric acid-induced priming phenomenon in Arabidopsis. Ton J, et al. Plant Cell, 2005 Mar. PMID 15722464, Free PMC Article
    3. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332357.1
    NM_001332358.1
    NM_101725.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of defense response to oomycetes IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of salicylic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Protein kinase superfamily protein
    NP_173302.2
    • IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G74330.2); Has 121773 Blast hits to 120368 proteins in 4310 species: Archae - 86; Bacteria - 13259; Metazoa - 45481; Fungi - 12893; Plants - 29647; Viruses - 443; Other Eukaryotes - 19964 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6426709..6431093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101725.3 → NP_173302.2  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173302.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ICB6, Q9M9T8
      UniProtKB/TrEMBL
      A0A5S9V1P7
      Conserved Domains (1) summary
      cd07840
      Location:131 → 418
      STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

    2. NM_001332357.1 → NP_001321210.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9V1P7

    3. NM_001332358.1 → NP_001321211.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQ94, A0A5S9V1P7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4ICB6.1

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