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    RPL18AA 60S ribosomal protein L18A-1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839876, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL18AA
    Official Full Name
    60S ribosomal protein L18A-1
    Primary source
    TAIR:AT1G29970
    Locus tag
    AT1G29970
    See related
    Araport:AT1G29970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    60S ribosomal protein L18A-1; T1P2.8; T1P2_8
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    Genomic context

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    See RPL18AA in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (10498351..10501498, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene AGAMOUS-like 64 Neighboring gene Ribosomal protein L18ae/LX family protein Neighboring gene miscRNA Neighboring gene choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084157.1
    NM_001160913.1
    NM_102737.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L18A-1
    NP_001077626.1
    • 60S ribosomal protein L18A-1 (RPL18AA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae/LX (InterPro:IPR021138), Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae/LX family protein (TAIR:AT1G29965.1); Has 869 Blast hits to 867 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 315; Fungi - 155; Plants - 265; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
    NP_001154385.1
    • 60S ribosomal protein L18A-1; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G17080.1); Has 80 Blast hits to 80 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_564343.1
    • 60S ribosomal protein L18A-1 (RPL18AA); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G17080.1); Has 128 Blast hits to 128 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10498351..10501498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084157.1 → NP_001077626.1  60S ribosomal protein L18A-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077626.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WFI4, A0A654EFA8, A8MRF3
      Conserved Domains (1) summary
      pfam01775
      Location:219 → 263
      Ribosomal_L18ae; Ribosomal L18ae/LX protein domain

    2. NM_102737.3 → NP_564343.1  60S ribosomal protein L18A-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564343.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9S1, Q9C8S2
      UniProtKB/TrEMBL
      A0A178W4K1, Q0WNX5

    3. NM_001160913.1 → NP_001154385.1  60S ribosomal protein L18A-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154385.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I376
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9S1.2

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