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    DDT domain superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838476, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DDT domain superfamily
    Primary source
    TAIR:AT1G18950
    Locus tag
    AT1G18950
    See related
    Araport:AT1G18950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14D16.10; F14D16_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (6546177..6552108)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Nodulin-like / Major Facilitator Superfamily protein Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene germin-like protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SLIDE, the protein interacting domain of Imitation Switch remodelers, binds DDT-domain proteins of different subfamilies in chromatin remodeling complexes. Dong J, et al. J Integr Plant Biol, 2013 Oct. PMID 23691993
    2. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article
    3. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. Luo YX, et al. EMBO J, 2020 Apr 1. PMID 32115743, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101752.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RSF complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DDT domain superfamily
    NP_173329.2
    • DDT domain superfamily; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41; Bacteria - 1919; Metazoa - 8043; Fungi - 2539; Plants - 1031; Viruses - 220; Other Eukaryotes - 6500 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6546177..6552108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332379.1 → NP_001321622.1  DDT domain superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCD8, A0A1P8ARG8, A0A5S9V2E9
      Conserved Domains (2) summary
      pfam02791
      Location:138 → 186
      DDT; DDT domain
      pfam15612
      Location:232 → 262
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1

    2. NM_001332380.1 → NP_001321623.1  DDT domain superfamily [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAJ5, A0A1P8ARH9, A0A7G2DUA5
      Conserved Domains (2) summary
      pfam02791
      Location:138 → 186
      DDT; DDT domain
      pfam15612
      Location:232 → 262
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1

    3. NM_101752.4 → NP_173329.2  DDT domain superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173329.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDY7, Q9LMD2, Q9LMD3
      UniProtKB/TrEMBL
      A0A178WAJ5, A0A7G2DX91
      Conserved Domains (2) summary
      pfam02791
      Location:138 → 186
      DDT; DDT domain
      pfam15612
      Location:232 → 262
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IDY7.1

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