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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821179, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT3G02290
    Locus tag
    AT3G02290
    See related
    Araport:AT3G02290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14P3.6; F14P3_6
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (458156..461063)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Flavodoxin family protein Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene K-box region and MADS-box transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337393.1
    NM_001337394.1
    NM_001337395.1
    NM_001337396.1
    NM_001337397.1
    NM_111096.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001319449.1
    • RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15790.2); Has 86 Blast hits to 86 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_566169.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15790.2); Has 5868 Blast hits to 5858 proteins in 250 species: Archae - 0; Bacteria - 2; Metazoa - 1823; Fungi - 365; Plants - 2709; Viruses - 17; Other Eukaryotes - 952 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      458156..461063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111096.4 → NP_566169.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566169.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XU2, Q8LE94, Q9SRU5
      UniProtKB/TrEMBL
      A0A178VND6, A0A178VQ30, A0A5S9X8E3
      Conserved Domains (2) summary
      cd00162
      Location:181 → 221
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:179 → 221
      zf-RING_2; Ring finger domain

    2. NM_001337394.1 → NP_001325923.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XU2, Q8LE94, Q9SRU5
      UniProtKB/TrEMBL
      A0A178VND6, A0A178VQ30, A0A5S9X8E3
      Conserved Domains (2) summary
      cd00162
      Location:181 → 221
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:179 → 221
      zf-RING_2; Ring finger domain

    3. NM_001337395.1 → NP_001325921.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XU2, Q8LE94, Q9SRU5
      UniProtKB/TrEMBL
      A0A178VND6, A0A178VQ30, A0A5S9X8E3
      Conserved Domains (2) summary
      cd00162
      Location:181 → 221
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:179 → 221
      zf-RING_2; Ring finger domain

    4. NM_001337396.1 → NP_001325920.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VND6, A0A1I9LMP4

    5. NM_001337397.1 → NP_001325922.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XU2, Q8LE94, Q9SRU5
      UniProtKB/TrEMBL
      A0A178VND6, A0A178VQ30, A0A5S9X8E3
      Conserved Domains (2) summary
      cd00162
      Location:181 → 221
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:179 → 221
      zf-RING_2; Ring finger domain

    6. NM_001337393.1 → NP_001319449.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XU2, Q8LE94, Q9SRU5
      UniProtKB/TrEMBL
      A0A178VND6, A0A178VQ30, A0A5S9X8E3
      Conserved Domains (2) summary
      cd00162
      Location:181 → 221
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam13639
      Location:179 → 221
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LE94.1

    Gene LinkOut

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