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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819839, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G06600
    Locus tag
    AT3G06600
    See related
    Araport:AT3G06600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5E6.7; F5E6_7
    Summary
    At3G06600 encodes the plant KASH protein SINE3; SINE3 interacts with SUN1 and SUN2 and is localized at the nuclear envelope.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2055623..2060585, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Mevalonate/galactokinase family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene DNA-binding enhancer protein-like protein Neighboring gene PAS domain-containing protein tyrosine kinase family protein Neighboring gene ncRNA Neighboring gene protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of unique SUN-interacting nuclear envelope proteins with diverse functions in plants. Zhou X, et al. J Cell Biol, 2014 Jun 9. PMID 24891605, Free PMC Article
    2. A novel family of plant nuclear envelope-associated proteins. Pawar V, et al. J Exp Bot, 2016 Oct. PMID 27630107
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125121.2
    NM_111536.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001118593.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_187312.1
    • unknown protein; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2055623..2060585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337666.1 → NP_001327815.1  uncharacterized protein AT3G06600 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C900
      UniProtKB/TrEMBL
      A0A178VEM7, A0A5S9XA27

    2. NM_001125121.2 → NP_001118593.1  uncharacterized protein AT3G06600 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118593.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C900
      UniProtKB/TrEMBL
      A0A178VEM7, A0A5S9XA27

    3. NM_111536.3 → NP_187312.1  uncharacterized protein AT3G06600 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187312.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C900
      UniProtKB/TrEMBL
      A0A178VEM7, A0A5S9XA27
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C900.1

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