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    TDF1 Duplicated homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822477, updated on 18-Sep-2024

    Summary

    Official Symbol
    TDF1
    Official Full Name
    Duplicated homeodomain-like superfamily protein
    Primary source
    TAIR:AT3G28470
    Locus tag
    AT3G28470
    See related
    Araport:AT3G28470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB35; DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1; MYB DOMAIN PROTEIN 35; MYB35
    Summary
    Member of the R2R3 factor gene family.
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    Genomic context

    See TDF1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (10674508..10675724, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 25 Neighboring gene methyltransferase Neighboring gene Oxoglutarate/iron-dependent oxygenase Neighboring gene Oxoglutarate/iron-dependent oxygenase

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    NM_113767.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther wall tapetum development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in anther wall tapetum development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in callose localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within microgametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in microgametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Duplicated homeodomain-like superfamily protein
    NP_189488.1
    • DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1 (TDF1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1); Has 8909 Blast hits to 8197 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 781; Fungi - 493; Plants - 5873; Viruses - 5; Other Eukaryotes - 1757 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10674508..10675724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113767.2NP_189488.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189488.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MEZ1, O49770, Q9LSI7
      UniProtKB/TrEMBL
      A0A178VQ25, A0A654FBL4
      Conserved Domains (1) summary
      PLN03091
      Location:1131
      PLN03091; hypothetical protein; Provisional