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    DCD (Development and Cell Death) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822327, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DCD (Development and Cell Death) domain protein
    Primary source
    TAIR:AT3G27090
    Locus tag
    AT3G27090
    See related
    Araport:AT3G27090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (9989511..9991903)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene translocase outer membrane 20-1 Neighboring gene translocase of outer membrane 20 kDa subunit 3 Neighboring gene miscRNA Neighboring gene transcription/mRNA export factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Abscisic acid employs NRP-dependent PIN2 vacuolar degradation to suppress auxin-mediated primary root elongation in Arabidopsis. Wu Y, et al. New Phytol, 2022 Jan. PMID 34618941
    2. Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress. Yang Y, et al. Plant Physiol, 2021 Nov 3. PMID 34618053, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress.
      Title: Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338852.1
    NM_001338853.1
    NM_113623.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of programmed cell death IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of protein catabolic process in the vacuole IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to endoplasmic reticulum stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    DCD (Development and Cell Death) domain protein
    NP_189345.1
    • DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G42050.1); Has 746 Blast hits to 671 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9989511..9991903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113623.4 → NP_189345.1  DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189345.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF83, A0A384KRU4, A0A5S9XGD0, Q8LBT1, Q9LSC7
      Conserved Domains (1) summary
      smart00767
      Location:160 → 292
      DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death

    2. NM_001338852.1 → NP_001325613.1  DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF83, A0A384KRU4, A0A5S9XGD0, Q8LBT1, Q9LSC7
      Conserved Domains (1) summary
      smart00767
      Location:160 → 292
      DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death

    3. NM_001338853.1 → NP_001325614.1  DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF83, A0A384KRU4, A0A5S9XGD0, Q8LBT1, Q9LSC7
      Conserved Domains (1) summary
      smart00767
      Location:160 → 292
      DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death
    Nucleotide Protein
    Heading Accession and Version

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