U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOW protein: PPR containing-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821417, updated on 18-Sep-2024

    Summary

    Official Full Name
    LOW protein: PPR containing-like protein
    Primary source
    TAIR:AT3G18840
    Locus tag
    AT3G18840
    See related
    Araport:AT3G18840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (6496135..6498388)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene polyol/monosaccharide transporter 5 Neighboring gene miscRNA Neighboring gene lysophosphatidyl acyltransferase 5

    General gene information

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    LOW protein: PPR containing-like protein
    NP_001078182.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 42936 Blast hits to 13106 proteins in 190 species: Archae - 0; Bacteria - 3; Metazoa - 51; Fungi - 30; Plants - 42456; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6496135..6498388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084713.3NP_001078182.2  LOW protein: PPR containing-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078182.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHN5
      UniProtKB/TrEMBL
      A0A178VAZ2, A0A654F8J4
      Conserved Domains (2) summary
      PLN03077
      Location:25664
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:2552
      PPR; PPR repeat [structural motif]
    2. NM_001338360.1NP_001325455.1  LOW protein: PPR containing-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHN5
      UniProtKB/TrEMBL
      A0A178VAZ2, A0A654F8J4
      Conserved Domains (2) summary
      PLN03077
      Location:25664
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:2552
      PPR; PPR repeat [structural motif]