U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RBL12 RHOMBOID-like protein 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838441, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RBL12
    Official Full Name
    RHOMBOID-like protein 12
    Primary source
    TAIR:AT1G18600
    Locus tag
    AT1G18600
    See related
    Araport:AT1G18600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12; AtPARL; ATRBL12; F25I16.6; F25I16_6; PARL; presenilins-associated rhomboid-like protein; RHOMBOID-like protein 12
    Summary
    Mitochondrion-located rhomboid-like protein
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RBL12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (6400282..6402794)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene galacturonosyltransferase 11 Neighboring gene sulfotransferase 17 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene LONGIFOLIA protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Plant mitochondrial rhomboid, AtRBL12, has different substrate specificity from its yeast counterpart. Kmiec-Wisniewska B, et al. Plant Mol Biol, 2008 Sep. PMID 18543065
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_101718.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RHOMBOID-like protein 12
    NP_564058.1
    • RHOMBOID-like protein 12 (RBL12); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 3270 Blast hits to 3270 proteins in 960 species: Archae - 107; Bacteria - 1998; Metazoa - 110; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 865 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6400282..6402794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101718.5 → NP_564058.1  RHOMBOID-like protein 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564058.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZ81
      UniProtKB/TrEMBL
      A0A178WDJ5, A0A5S9V1M0
      Conserved Domains (1) summary
      pfam01694
      Location:170 → 318
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ81.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.