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    Cysteine/Histidine-rich C1 domain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823727, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cysteine/Histidine-rich C1 domain family protein
    Primary source
    TAIR:AT3G45840
    Locus tag
    AT3G45840
    See related
    Araport:AT3G45840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (16847904..16849944, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ferric reductase-like transmembrane component family protein Neighboring gene uncharacterized protein Neighboring gene nuclear factor kappa-B-binding-like protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114453.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cysteine/Histidine-rich C1 domain family protein
    NP_190170.2
    • Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1377 Blast hits to 647 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16847904..16849944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114453.3 → NP_190170.2  Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190170.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J6S4, Q9LZU6
      Conserved Domains (2) summary
      pfam03107
      Location:491 → 521
      C1_2; C1 domain
      pfam07649
      Location:331 → 359
      C1_3; C1-like domain
    Nucleotide Protein
    Heading Accession and Version

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