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    DEK domain-containing chromatin associated protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824032, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEK domain-containing chromatin associated protein
    Primary source
    TAIR:AT3G48710
    Locus tag
    AT3G48710
    See related
    Araport:AT3G48710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (18040675..18044368)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene carboxyesterase 13 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene glutamate-1-semialdehyde 2,1-aminomutase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_114730.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables histone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in negative regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    DEK domain-containing chromatin associated protein
    NP_190440.1
    • DEK domain-containing chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK domain-containing chromatin associated protein (TAIR:AT5G63550.2); Has 53243 Blast hits to 30328 proteins in 1615 species: Archae - 67; Bacteria - 9231; Metazoa - 21090; Fungi - 5394; Plants - 2191; Viruses - 327; Other Eukaryotes - 14943 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18040675..18044368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114730.3 → NP_190440.1  DEK domain-containing chromatin associated protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190440.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VK90, Q0WMA0, Q8LFD2, Q9SMM8
      UniProtKB/TrEMBL
      A0A384L6D6, A0A7G2ERA7
      Conserved Domains (2) summary
      PTZ00108
      Location:236 → 396
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
      pfam08766
      Location:385 → 438
      DEK_C; DEK C terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SMM8.1

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