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    TRM28 histone-lysine N-methyltransferase SETD1B-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831763, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM28
    Official Full Name
    histone-lysine N-methyltransferase SETD1B-like protein
    Primary source
    TAIR:AT5G03670
    Locus tag
    AT5G03670
    See related
    Araport:AT5G03670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17C15.90; F17C15_90; TON1 Recruiting Motif 28
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    Genomic context

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    See TRM28 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (947146..950239)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene starch branching enzyme 2.2 Neighboring gene transcriptional activator (DUF662) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342725.1
    NM_120448.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SETD1B-like protein
    NP_195987.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      947146..950239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120448.3 → NP_195987.1  histone-lysine N-methyltransferase SETD1B-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195987.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNJ0, A0A654FXZ0, Q9LZS1
      Conserved Domains (1) summary
      pfam14309
      Location:446 → 507
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001342725.1 → NP_001332708.1  histone-lysine N-methyltransferase SETD1B-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3F9
    Nucleotide Protein
    Heading Accession and Version

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