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    RPS10B RNA binding Plectin/S10 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834154, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPS10B
    Official Full Name
    RNA binding Plectin/S10 domain-containing protein
    Primary source
    TAIR:AT5G41520
    Locus tag
    AT5G41520
    See related
    Araport:AT5G41520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBK23.4; MBK23_4; ribosomal protein S10e B
    Summary
    The gene belongs to the three-member Arabidopsis gene family encoding the eukaryote-specific protein S10e of the small cytoplasmic ribosomal subunit.
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    Genomic context

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    See RPS10B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (16609021..16610692, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mutation of the cytosolic ribosomal protein-encoding RPS10B gene affects shoot meristematic function in Arabidopsis. Stirnberg P, et al. BMC Plant Biol, 2012 Sep 10. PMID 22963533, Free PMC Article
    2. Late ribosomal protein localization in Arabidopsis thaliana differs to that in Saccharomyces cerevisiae. Palm D, et al. FEBS Open Bio, 2018 Sep. PMID 30186745, Free PMC Article
    3. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    4. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RPS10B promotes shoot branching mainly by promoting axillary shoot development.
      Title: Mutation of the cytosolic ribosomal protein-encoding RPS10B gene affects shoot meristematic function in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085219.1
    NM_123516.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within axillary shoot meristem initiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of secondary shoot formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    colocalizes_with cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    colocalizes_with nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    RNA binding Plectin/S10 domain-containing protein
    NP_001078688.1
    • RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic small ribosomal subunit, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 5348 Blast hits to 3413 proteins in 496 species: Archae - 0; Bacteria - 797; Metazoa - 2352; Fungi - 518; Plants - 946; Viruses - 57; Other Eukaryotes - 678 (source: NCBI BLink).
    NP_198967.1
    • RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16609021..16610692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123516.4 → NP_198967.1  RNA binding Plectin/S10 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198967.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFS8
      UniProtKB/TrEMBL
      A0A178UD67, A0A5S9YAJ3
      Conserved Domains (1) summary
      pfam03501
      Location:3 → 95
      S10_plectin; Plectin/S10 domain

    2. NM_001085219.1 → NP_001078688.1  RNA binding Plectin/S10 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078688.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRV0
      Conserved Domains (1) summary
      pfam03501
      Location:1 → 50
      S10_plectin; Plectin/S10 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFS8.1

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