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    SAP domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836465, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SAP domain-containing protein
    Primary source
    TAIR:AT5G63460
    Locus tag
    AT5G63460
    See related
    Araport:AT5G63460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MLE2.9; MLE2_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (25413286..25415592, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF167) Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 1 Neighboring gene nuclear factor Y, subunit C4 Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LOWER TEMPERATURE 1 Enhances ABA Responses and Plant Drought Tolerance by Modulating the Stability and Localization of C2-Domain ABA-Related Proteins in Arabidopsis. Qin T, et al. Mol Plant, 2019 Sep 2. PMID 31102784
    2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203677.1
    NM_203257.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of protein stability IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    involved_in response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SAP domain-containing protein
    NP_001190606.1
    • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276).
    NP_001190607.1
    • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276).
    NP_201151.2
    • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974986.1
    • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25413286..25415592 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125741.5 → NP_201151.2  SAP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201151.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KAQ0, Q6IDA6, Q9FMV6
      UniProtKB/TrEMBL
      A0A178UIX2, A0A7G2FJG2
      Conserved Domains (3) summary
      PLN03124
      Location:82 → 161
      PLN03124; poly [ADP-ribose] polymerase; Provisional
      pfam02037
      Location:128 → 161
      SAP; SAP domain
      pfam10172
      Location:18 → 76
      DDA1; Det1 complexing ubiquitin ligase

    2. NM_001203678.1 → NP_001190607.1  SAP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190607.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KAP9
      Conserved Domains (2) summary
      pfam02037
      Location:65 → 98
      SAP; SAP domain
      pfam10172
      Location:18 → 55
      DDA1; Det1 complexing ubiquitin ligase

    3. NM_001203677.1 → NP_001190606.1  SAP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190606.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FJG2, F4KAQ2
      Conserved Domains (2) summary
      pfam02037
      Location:140 → 173
      SAP; SAP domain
      pfam10172
      Location:18 → 88
      DDA1; Det1 complexing ubiquitin ligase

    4. NM_203257.2 → NP_974986.1  SAP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974986.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FJG2
      Conserved Domains (2) summary
      pfam02037
      Location:127 → 160
      SAP; SAP domain
      pfam10172
      Location:18 → 76
      DDA1; Det1 complexing ubiquitin ligase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6IDA6.1

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