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    GYRB3 DNA GYRASE B3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830289, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GYRB3
    Official Full Name
    DNA GYRASE B3
    Primary source
    TAIR:AT5G04110
    Locus tag
    AT5G04110
    See related
    Araport:AT5G04110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT5G04100; DNA GYRASE B3; F21E1.30; F21E1_30
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    Genomic context

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    See GYRB3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (1110342..1115007, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene histidine-tRNA ligase Neighboring gene Phosphoglycerate mutase family protein Neighboring gene DNA GYRASE B2 Neighboring gene glutamate synthase 1 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria. Wall MK, et al. Proc Natl Acad Sci U S A, 2004 May 18. PMID 15136745, Free PMC Article
    2. Arabidopsis thaliana GYRB3 does not encode a DNA gyrase subunit. Evans-Roberts KM, et al. PLoS One, 2010 Mar 26. PMID 20360860, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342751.1
    NM_001342752.1
    NM_120493.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables DNA topoisomerase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables DNA topoisomerase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA GYRASE B3
    NP_196031.2
    • DNA GYRASE B3 (GYRB3); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 21414 Blast hits to 21375 proteins in 6002 species: Archae - 105; Bacteria - 17678; Metazoa - 58; Fungi - 26; Plants - 200; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1110342..1115007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342750.1 → NP_001330565.1  DNA GYRASE B3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9Q5, A0A1P8BB88

    2. NM_120493.3 → NP_196031.2  DNA GYRASE B3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196031.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBL5, Q8VY11
      Conserved Domains (2) summary
      cd00167
      Location:469 → 517
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00204
      Location:41 → 210
      DNA_gyraseB; DNA gyrase B

    3. NM_001342752.1 → NP_001330564.1  DNA GYRASE B3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBL5, A0A1P8BB70

    4. NM_001342751.1 → NP_001330566.1  DNA GYRASE B3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBL5, Q8VY11
      Conserved Domains (2) summary
      cd00167
      Location:469 → 517
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00204
      Location:41 → 210
      DNA_gyraseB; DNA gyrase B
    Nucleotide Protein
    Heading Accession and Version

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