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    F56B3.4 RNA polymerase II-associated protein 1 N-terminal domain-containing protein;RPAP1_N domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176905, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F56B3.4
    Official Full Name
    RNA polymerase II-associated protein 1 N-terminal domain-containing protein;RPAP1_N domain-containing protein
    Primary source
    WormBase:WBGene00004824
    Locus tag
    CELE_F56B3.4
    See related
    AllianceGenome:WB:WBGene00004824
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in transcription by RNA polymerase II. Orthologous to human RPAP1 (RNA polymerase II associated protein 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F56B3.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (786234..794275, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene glucuronosyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Receptor expression-enhancing protein Neighboring gene Skp1-related protein Neighboring gene Mitochondrial import inner membrane translocase subunit Tim21;TIM21-like protein, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II-associated protein 1 N-terminal domain-containing protein;RPAP1_N domain-containing protein
    NP_001023231.2
    • Confirmed by transcript evidence
    NP_001023232.2
    • Confirmed by transcript evidence
    NP_001368335.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      786234..794275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001028060.4 → NP_001023231.2  RNA polymerase II-associated protein 1 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023231.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L086
      Conserved Domains (1) summary
      pfam08621
      Location:164 → 206
      RPAP1_N; RPAP1-like, N-terminal

    2. NM_001028061.6 → NP_001023232.2  RNA polymerase II-associated protein 1 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023232.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      C3JXE2
      Conserved Domains (1) summary
      pfam08621
      Location:164 → 208
      RPAP1_N; RPAP1-like, N-terminal

    3. NM_001380019.1 → NP_001368335.1  RPAP1_N domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PS75
    Nucleotide Protein
    Heading Accession and Version

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