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    scly-1 Selenocysteine lyase [ Caenorhabditis elegans ]

    Gene ID: 184440, updated on 9-Dec-2024

    Summary

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    Official Symbol
    scly-1
    Official Full Name
    Selenocysteine lyase
    Primary source
    WormBase:WBGene00017442
    Locus tag
    CELE_F13H8.9
    See related
    AllianceGenome:WB:WBGene00017442
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transaminase activity. Predicted to be located in cytosol. Orthologous to human SCLY (selenocysteine lyase). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See scly-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (6279676..6281102, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Small-subunit processome Utp12 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene BPL/LPL catalytic domain-containing protein Neighboring gene Enhancer of polycomb-like protein Neighboring gene DUF4238 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Selenocysteine lyase
    NP_495258.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6279676..6281102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062857.7 → NP_495258.2  Selenocysteine lyase [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19434
      Conserved Domains (1) summary
      COG1104
      Location:8 → 383
      NifS; Cysteine sulfinate desulfinase/cysteine desulfurase or related enzyme [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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