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    F42H11.1 Collagen triple helix repeat protein [ Caenorhabditis elegans ]

    Gene ID: 185688, updated on 4-Jan-2025

    Summary

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    Official Symbol
    F42H11.1
    Official Full Name
    Collagen triple helix repeat protein
    Primary source
    WormBase:WBGene00009646
    Locus tag
    CELE_F42H11.1
    See related
    AllianceGenome:WB:WBGene00009646
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See F42H11.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (9576357..9577889)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ig-like domain-containing protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Ankyrin repeat and LEM domain-containing protein 1 homolog Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Collagen triple helix repeat protein
    NP_001361872.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      9576357..9577889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001375113.3 → NP_001361872.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EBJ0
      Conserved Domains (1) summary
      pfam03057
      Location:149 → 175
      DUF236; DUF236 repeat
    Nucleotide Protein
    Heading Accession and Version

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