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    TMEM277P transmembrane protein 277, pseudogene [ Homo sapiens (human) ]

    Gene ID: 284365, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TMEM277Pprovided by HGNC
    Official Full Name
    transmembrane protein 277, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:25050
    See related
    Ensembl:ENSG00000293414 AllianceGenome:HGNC:25050
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01869
    Expression
    Biased expression in testis (RPKM 1.9), spleen (RPKM 0.2) and 7 other tissues See more
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    Genomic context

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    See TMEM277P in Genome Data Viewer
    Location:
    19q13.33
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (50804901..50818878)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (53894392..53908521)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (51308158..51322134)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene multidrug resistance-related protein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:51305278-51305778 Neighboring gene small nucleolar RNA, C/D box 88A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14999 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10979 Neighboring gene small nucleolar RNA, C/D box 88C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15002 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10980 Neighboring gene kallikrein 1 Neighboring gene kallikrein related peptidase 15 Neighboring gene uncharacterized LOC105372441

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment. Kim J, et al. Nat Methods, 2005 Jan. PMID 15782160
    2. CFTR interactome mapping using the mammalian membrane two-hybrid high-throughput screening system. Lim SH, et al. Mol Syst Biol, 2022 Feb. PMID 35156780, Free PMC Article
    3. Pooled-matrix protein interaction screens using Barcode Fusion Genetics. Yachie N, et al. Mol Syst Biol, 2016 Apr 22. PMID 27107012, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • CTD-2568A17.5
    • long intergenic non-protein coding RNA 1869

    Clone Names

    • MGC45922

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC033237
      Related
      ENST00000326989.5

    2. NR_197389.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010325
      Related
      ENST00000812444.1

    3. NR_197390.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010325
      Related
      ENST00000812453.1

    4. NR_197391.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010325
      Related
      ENST00000812446.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      50804901..50818878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      53894392..53908521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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