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    LOC101928532 uncharacterized LOC101928532 [ Homo sapiens (human) ]

    Gene ID: 101928532, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101928532
    Gene description
    uncharacterized LOC101928532
    See related
    Ensembl:ENSG00000250915
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.1) See more
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    Genomic context

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    See LOC101928532 in Genome Data Viewer
    Location:
    4p16.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (8745396..8747722, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (8731018..8733364, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (8747122..8749448, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:8582279-8582940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8588835-8589335 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8595495-8596169 Neighboring gene uncharacterized LOC124900659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8608601-8609168 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8609169-8609736 Neighboring gene G protein-coupled receptor 78 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:8618505-8618698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8632034-8632534 Neighboring gene carboxypeptidase Z Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8655353-8655869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8691763-8692264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8696486-8697142 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8703017-8703985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8707175-8707921 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8707922-8708668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8711370-8712145 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8725118-8725618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8725619-8726119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8727547-8728159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8728926-8729631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8731043-8731746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8746853-8747380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8764548-8765048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8765049-8765549 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8766906-8767766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8773080-8773597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8819142-8819928 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:8838985-8839598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8858613-8859157 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8859158-8859701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:8860247-8860789 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:8861378-8861996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:8861997-8862614 Neighboring gene H6 family homeobox 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:8893515-8894514 Neighboring gene olfactory receptor family 7 subfamily E member 85B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • FLJ25425, FLJ40175

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187901.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC209005
      Related
      ENST00000514043.2

    2. NR_187902.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC209005
      Related
      ENST00000810616.1

    3. NR_187903.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC209005
      Related
      ENST00000810617.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      8745396..8747722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021159993.1 Reference GRCh38.p14 PATCHES

      Range
      16449..18775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      8731018..8733364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials