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    FABP12 fatty acid binding protein 12 [ Homo sapiens (human) ]

    Gene ID: 646486, updated on 10-Dec-2024

    Summary

    Official Symbol
    FABP12provided by HGNC
    Official Full Name
    fatty acid binding protein 12provided by HGNC
    Primary source
    HGNC:HGNC:34524
    See related
    Ensembl:ENSG00000197416 MIM:618923; AllianceGenome:HGNC:34524
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to enable fatty acid binding activity. Predicted to be involved in fatty acid transport. Predicted to be active in cytosol and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See FABP12 in Genome Data Viewer
    Location:
    8q21.13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (81524981..81590139, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (81956575..82022256, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (82437216..82446102, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927118 Neighboring gene fatty acid binding protein 4 Neighboring gene ferritin heavy chain 1 pseudogene 11 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:82512159-82512934 Neighboring gene inositol monophosphatase 1 pseudogene 1 Neighboring gene NIPA2 pseudogene 4 Neighboring gene ribosomal protein S26 pseudogene 34

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
    EBI GWAS Catalog
    GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables fatty acid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in fatty acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    fatty acid-binding protein 12
    Names
    Probable fatty acid-binding protein ENSP00000353650
    fatty acid binding protein ORF
    intracellular fatty acid-binding protein FABP12

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105281.6NP_001098751.1  fatty acid-binding protein 12

      See identical proteins and their annotated locations for NP_001098751.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the protein-coding transcript.
      Source sequence(s)
      AC023644
      Consensus CDS
      CCDS47882.1
      UniProtKB/Swiss-Prot
      A6NFH5, B7SUN0
      Related
      ENSP00000353650.4, ENST00000360464.6
      Conserved Domains (1) summary
      pfam00061
      Location:6131
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RNA

    1. NR_144370.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC023644, BC146973, BE463892
      Related
      ENST00000519696.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      81524981..81590139 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011517577.3XP_011515879.1  fatty acid-binding protein 12 isoform X1

      See identical proteins and their annotated locations for XP_011515879.1

      UniProtKB/Swiss-Prot
      A6NFH5, B7SUN0
      Related
      ENSP00000510293.1, ENST00000692030.1
      Conserved Domains (1) summary
      pfam00061
      Location:6131
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
    2. XM_006716465.4XP_006716528.1  fatty acid-binding protein 12 isoform X1

      See identical proteins and their annotated locations for XP_006716528.1

      UniProtKB/Swiss-Prot
      A6NFH5, B7SUN0
      Conserved Domains (1) summary
      pfam00061
      Location:6131
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      81956575..82022256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054361014.1XP_054216989.1  fatty acid-binding protein 12 isoform X1

      UniProtKB/Swiss-Prot
      A6NFH5, B7SUN0
    2. XM_054361013.1XP_054216988.1  fatty acid-binding protein 12 isoform X1

      UniProtKB/Swiss-Prot
      A6NFH5, B7SUN0