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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_051298.1 RefSeqGene
- Range
-
4805..972553
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001079653.2 → NP_001073121.1 protein sidekick-1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks several exons in the 5' coding region, uses a downstream in-frame start codon, and differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a significantly shorter N-terminus and a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AL833354, DB065853, DB454012
- Related
-
ENST00000476701.5
- Conserved Domains (1) summary
-
- cd00063
Location:191 → 284
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
-
NM_152744.4 → NP_689957.3 protein sidekick-1 isoform 1
See identical proteins and their annotated locations for NP_689957.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC015968, AC017000, AC073316, AL833354, AY310398, DB065853
- Consensus CDS
-
CCDS34590.1
- UniProtKB/Swiss-Prot
- Q7Z5N4, Q8TEN9, Q8TEP5, Q96N44
- UniProtKB/TrEMBL
-
F8W6X9
- Related
- ENSP00000385899.2, ENST00000404826.7
- Conserved Domains (6) summary
-
- cd00096
Location:404 → 472
- Ig; Immunoglobulin domain
- smart00408
Location:312 → 364
- IGc2; Immunoglobulin C-2 Type
- cd00063
Location:1704 → 1797
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:480 → 570
- I-set; Immunoglobulin I-set domain
- pfam00041
Location:771 → 857
- fn3; Fibronectin type III domain
- cl11960
Location:494 → 570
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
3301252..4269000
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047420038.1 → XP_047275994.1 protein sidekick-1 isoform X4
- UniProtKB/TrEMBL
-
F8W6X9
-
XM_047420037.1 → XP_047275993.1 protein sidekick-1 isoform X3
- UniProtKB/TrEMBL
-
F8W6X9
-
XM_024446683.2 → XP_024302451.1 protein sidekick-1 isoform X1
- UniProtKB/TrEMBL
-
F8W6X9
- Conserved Domains (6) summary
-
- cd00063
Location:1453 → 1546
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:229 → 319
- I-set; Immunoglobulin I-set domain
- pfam00041
Location:722 → 803
- fn3; Fibronectin type III domain
- pfam13927
Location:42 → 113
- Ig_3; Immunoglobulin domain
- cl11960
Location:329 → 413
- Ig; Immunoglobulin domain
- cl28434
Location:135 → 224
- I-set; Immunoglobulin I-set domain
-
XM_024446684.2 → XP_024302452.1 protein sidekick-1 isoform X2
- UniProtKB/TrEMBL
-
F8W6X9
- Conserved Domains (6) summary
-
- cd00063
Location:1433 → 1526
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam07679
Location:229 → 319
- I-set; Immunoglobulin I-set domain
- pfam00041
Location:722 → 803
- fn3; Fibronectin type III domain
- pfam13927
Location:42 → 113
- Ig_3; Immunoglobulin domain
- cl11960
Location:329 → 413
- Ig; Immunoglobulin domain
- cl28434
Location:135 → 224
- I-set; Immunoglobulin I-set domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
3415529..4385763
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054357556.1 → XP_054213531.1 protein sidekick-1 isoform X3
- UniProtKB/TrEMBL
-
F8W6X9
-
XM_054357557.1 → XP_054213532.1 protein sidekick-1 isoform X4
- UniProtKB/TrEMBL
-
F8W6X9
-
XM_054357554.1 → XP_054213529.1 protein sidekick-1 isoform X1
- UniProtKB/TrEMBL
-
F8W6X9
-
XM_054357555.1 → XP_054213530.1 protein sidekick-1 isoform X2
- UniProtKB/TrEMBL
-
F8W6X9