CD160 CD160 molecule [Homo sapiens (human)] - Gene

Summary

Official Symbol: CD160provided by HGNC
Official Full Name: CD160 moleculeprovided by HGNC
Primary source: HGNC:HGNC:17013
See related: Ensembl:ENSG00000117281 MIM:604463; AllianceGenome:HGNC:17013
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: NK1; BY55; NK28
Summary: CD160 is an 27 kDa glycoprotein which was initially identified with the monoclonal antibody BY55. Its expression is tightly associated with peripheral blood NK cells and CD8 T lymphocytes with cytolytic effector activity. The cDNA sequence of CD160 predicts a cysteine-rich, glycosylphosphatidylinositol-anchored protein of 181 amino acids with a single Ig-like domain weakly homologous to KIR2DL4 molecule. CD160 is expressed at the cell surface as a tightly disulfide-linked multimer. RNA blot analysis revealed CD160 mRNAs of 1.5 and 1.6 kb whose expression was highly restricted to circulating NK and T cells, spleen and small intestine. Within NK cells CD160 is expressed by CD56dimCD16+ cells whereas among circulating T cells its expression is mainly restricted to TCRgd bearing cells and to TCRab+CD8brightCD95+CD56+CD28-CD27-cells. In tissues, CD160 is expressed on all intestinal intraepithelial lymphocytes. CD160 shows a broad specificity for binding to both classical and nonclassical MHC class I molecules. [provided by RefSeq, Jul 2008]
Expression: Biased expression in spleen (RPKM 5.2), duodenum (RPKM 1.7) and 12 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 1q21.1

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	1	NC_000001.11 (145719499..145739288)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	1	NC_060925.1 (144836284..144856072)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	1	NC_000001.10 (145695798..145715586, complement)

Chromosome 1 - NC_000001.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

TIM-3/Galectin-9 and CD160 expression in salivary adenoid cystic carcinoma.
Title: TIM-3/Galectin-9 and CD160 expression in salivary adenoid cystic carcinoma.
Plasma extracellular vesicle transcriptomics identifies CD160 for predicting immunochemotherapy efficacy in lung cancer.
Title: Plasma extracellular vesicle transcriptomics identifies CD160 for predicting immunochemotherapy efficacy in lung cancer.
The soluble form of CD160 acts as a tumor mediator of immune escape in melanoma.
Title: The soluble form of CD160 acts as a tumor mediator of immune escape in melanoma.
[Expression of CD160 in natural killer (NK) cells from patients with active tuberculosis and its relationship with cell functions].
Title: [Expression of CD160 in natural killer (NK) cells from patients with active tuberculosis and its relationship with cell functions].
CD160 Promotes NK Cell Functions by Upregulating Glucose Metabolism and Negatively Correlates With HIV Disease Progression.
Title: CD160 Promotes NK Cell Functions by Upregulating Glucose Metabolism and Negatively Correlates With HIV Disease Progression.
Associations between CD160 polymorphisms and autoimmune thyroid disease: a case-control study.
Title: Associations between CD160 polymorphisms and autoimmune thyroid disease: a case-control study.
CD160 protein as a new therapeutic target in a battle against autoimmune, infectious and lifestyle diseases. Analysis of the structure, interactions and functions.
Title: CD160 protein as a new therapeutic target in a battle against autoimmune, infectious and lifestyle diseases. Analysis of the structure, interactions and functions.
HVEM structures and mutants reveal distinct functions of binding to LIGHT and BTLA/CD160.
Title: HVEM structures and mutants reveal distinct functions of binding to LIGHT and BTLA/CD160.
Expanded antigen-experienced CD160(+)CD8(+)effector T cells exhibit impaired effector functions in chronic lymphocytic leukemia.
Title: Expanded antigen-experienced CD160(+)CD8(+)effector T cells exhibit impaired effector functions in chronic lymphocytic leukemia.
Redesigning HVEM Interface for Selective Binding to LIGHT, BTLA, and CD160.
Title: Redesigning HVEM Interface for Selective Binding to LIGHT, BTLA, and CD160.

Submit: New GeneRIF Correction See all GeneRIFs (39)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH47556 (e-PCR)
- UniSTS:74269

AL034202 (e-PCR)
- UniSTS:94028

RH78835 (e-PCR)
- UniSTS:2403

CD160_2137 (e-PCR)
- UniSTS:280482

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables MHC class I protein complex binding	IEA Inferred from Electronic Annotation more info
enables MHC class I receptor activity	IDA Inferred from Direct Assay more info	PubMed
enables MHC class Ib receptor activity	IDA Inferred from Direct Assay more info	PubMed
enables activating MHC class I receptor activity	IDA Inferred from Direct Assay more info	PubMed
enables kinase binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables signaling receptor binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in T cell costimulation	IDA Inferred from Direct Assay more info	PubMed
involved_in adaptive immune response	IEA Inferred from Electronic Annotation more info
involved_in angiogenesis	IEA Inferred from Electronic Annotation more info
involved_in defense response to Gram-negative bacterium	IEA Inferred from Electronic Annotation more info
involved_in innate immune response	IEA Inferred from Electronic Annotation more info
involved_in mucosal immune response	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of CD4-positive, alpha-beta T cell costimulation	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of T cell receptor signaling pathway	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of adaptive immune memory response	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of angiogenesis	IDA Inferred from Direct Assay more info	PubMed
involved_in phosphatidylinositol 3-kinase/protein kinase B signal transduction	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of endothelial cell apoptotic process	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of natural killer cell cytokine production	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of natural killer cell degranulation	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of natural killer cell mediated cytotoxicity	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of natural killer cell mediated immune response to tumor cell	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of type II interferon production	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	TAS Traceable Author Statement more info
located_in side of membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: CD160 antigen

Names: CD160-delta Ig; natural killer cell receptor BY55; natural killer cell receptor, immunoglobulin superfamily member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_007053.4 → NP_008984.1 CD160 antigen precursor

See identical proteins and their annotated locations for NP_008984.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript.

Source sequence(s)

AA463248, AC242845, BC014465, CD638675

Consensus CDS

CCDS72861.1

UniProtKB/Swiss-Prot

A0A0B4J2A1, B8PRF2, O95971, Q5T2V6

UniProtKB/TrEMBL

Q6FH89

Related

ENSP00000358294.1, ENST00000369288.7

RNA

NR_103845.2 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.

Source sequence(s)

AA463248, AC242845, BC014465, CD638675