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    LINC02939 long intergenic non-protein coding RNA 2939 [ Homo sapiens (human) ]

    Gene ID: 642648, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC02939provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2939provided by HGNC
    Primary source
    HGNC:HGNC:55954
    See related
    AllianceGenome:HGNC:55954
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02939 in Genome Data Viewer
    Location:
    22q13.31
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (46064651..46071021, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (46549231..46555601, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (46460531..46466901, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905136 Neighboring gene long intergenic non-protein coding RNA 899 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13897 Neighboring gene PRR34 long non-coding RNA Neighboring gene PRR34 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13898 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13899 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46467816-46468370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46468371-46468923 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46480369-46480940 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:46481213-46482412 Neighboring gene uncharacterized LOC112268288 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46483852-46484461 Neighboring gene MIRLET7B host gene Neighboring gene microRNA 3619 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46500537-46501051 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46506657-46507190 Neighboring gene microRNA let-7a-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148973.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121672

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      46064651..46071021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      46549231..46555601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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