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    LOC102723409 uncharacterized LOC102723409 [ Homo sapiens (human) ]

    Gene ID: 102723409, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC102723409
    Gene description
    uncharacterized LOC102723409
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC102723409 in Genome Data Viewer
    Location:
    6q22.33
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (129492482..129569566, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (130686150..130763204, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene laminin subunit alpha 2 Neighboring gene NANOG hESC enhancer GRCh37_chr6:129761748-129762353 Neighboring gene RNA, U6 small nuclear 861, pseudogene Neighboring gene uncharacterized LOC124901401 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:129811717-129812916 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:129822854-129824053 Neighboring gene Sharpr-MPRA regulatory region 13537 Neighboring gene MPRA-validated peak6120 silencer Neighboring gene Rho GTPase activating protein 18 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25046 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17532 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17533 Neighboring gene Sharpr-MPRA regulatory region 14599 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17534 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25049 Neighboring gene ribosomal protein L5 pseudogene 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study of height and body mass index in Australian twin families. Liu JZ, et al. Twin Res Hum Genet, 2010 Apr. PMID 20397748, Free PMC Article
    2. Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years. Shaffer JR, et al. G3 (Bethesda), 2014 Feb 19. PMID 24347629, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study of height and body mass index in Australian twin families.
    EBI GWAS Catalog
    Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      129492482..129569566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001743860.2 RNA Sequence

    2. XR_007059756.1 RNA Sequence

    3. XR_007059761.1 RNA Sequence

    4. XR_007059757.1 RNA Sequence

    5. XR_007059765.1 RNA Sequence

    6. XR_007059754.1 RNA Sequence

    7. XR_001743859.2 RNA Sequence

    8. XR_007059760.1 RNA Sequence

    9. XR_007059759.1 RNA Sequence

    10. XR_007059766.1 RNA Sequence

    11. XR_007059764.1 RNA Sequence

    12. XR_007059758.1 RNA Sequence

    13. XR_007059755.1 RNA Sequence

    14. XR_007059762.1 RNA Sequence

    15. XR_007059763.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      130686150..130763204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007077119.1 RNA Sequence

    2. XR_007077121.1 RNA Sequence

    3. XR_007077130.1 RNA Sequence

    4. XR_007077118.1 RNA Sequence

    5. XR_007077132.1 RNA Sequence

    6. XR_007077125.1 RNA Sequence

    7. XR_007077124.1 RNA Sequence

    8. XR_007077131.1 RNA Sequence

    9. XR_007077129.1 RNA Sequence

    10. XR_007077123.1 RNA Sequence

    11. XR_007077126.1 RNA Sequence

    12. XR_007077122.1 RNA Sequence

    13. XR_007077120.1 RNA Sequence

    14. XR_007077127.1 RNA Sequence

    15. XR_007077128.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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