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    Rusf1 RUS family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 233913, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Rusf1provided by MGI
    Official Full Name
    RUS family member 1provided by MGI
    Primary source
    MGI:MGI:2384572
    See related
    Ensembl:ENSMUSG00000030780 AllianceGenome:MGI:2384572
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Orthologous to human RUSF1 (RUS family member 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in kidney adult (RPKM 65.0), duodenum adult (RPKM 30.3) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Rusf1 in Genome Data Viewer
    Location:
    7 F3; 7 70.08 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127870551..127897303, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (128271379..128298131, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:135380811-135380920 Neighboring gene STARR-positive B cell enhancer ABC_E2253 Neighboring gene STARR-positive B cell enhancer ABC_E8212 Neighboring gene zinc finger protein 696 Neighboring gene armadillo repeat containing 5 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:135396171-135396397 Neighboring gene transforming growth factor beta 1 induced transcript 1 Neighboring gene solute carrier family 5 (sodium/glucose cotransporter), member 2 Neighboring gene microRNA 3103 Neighboring gene alpha hemoglobin stabilizing protein Neighboring gene coiled-coil domain containing 72 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of a multi-functional cDNA library specific for mouse pancreatic islets and its application to microarray. Nishimura M, et al. DNA Res, 2004 Oct 31. PMID 15747579
    2. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC28903

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RUS family member 1
    Names
    RUS1 family protein C16orf58 homolog
    UPF0420 protein C16orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360882.1 → NP_001347811.1  RUS family member 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124566, BP764390
      Conserved Domains (1) summary
      pfam04884
      Location:1 → 128
      DUF647; Vitamin B6 photo-protection and homoeostasis

    2. NM_145590.2 → NP_663565.2  RUS family member 1 isoform 1

      See identical proteins and their annotated locations for NP_663565.2

      Status: VALIDATED

      Source sequence(s)
      AK149645, BP764390, BY236419
      Consensus CDS
      CCDS21895.1
      UniProtKB/Swiss-Prot
      Q3TCP4, Q3UEA8, Q3UFY1, Q91W34
      UniProtKB/TrEMBL
      A0A0R4J0B5
      Related
      ENSMUSP00000033044.10, ENSMUST00000033044.16
      Conserved Domains (1) summary
      pfam04884
      Location:68 → 301
      DUF647; Vitamin B6 photo-protection and homoeostasis

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      127870551..127897303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91W34.1 GenPept UniProtKB/Swiss-Prot:Q91W34

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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