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    AW554918 expressed sequence AW554918 [ Mus musculus (house mouse) ]

    Gene ID: 225289, updated on 27-Nov-2024

    Summary

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    Official Symbol
    AW554918provided by MGI
    Official Full Name
    expressed sequence AW554918provided by MGI
    Primary source
    MGI:MGI:2147376
    See related
    Ensembl:ENSMUSG00000033632 AllianceGenome:MGI:2147376
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa1328; mKIAA1328; 4921538P22
    Summary
    Orthologous to human KIAA1328 (KIAA1328). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 4.2), CNS E14 (RPKM 1.5) and 23 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See AW554918 in Genome Data Viewer
    Location:
    18 A2; 18 13.74 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (25301825..25600378)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (25168730..25467321)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr18:24835661-24835962 Neighboring gene molybdenum cofactor sulfurase Neighboring gene formin homology 2 domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_44073 Neighboring gene 39S ribosomal protein L42, mitochondrial pseudogene Neighboring gene STARR-seq mESC enhancer starr_44075 Neighboring gene tubulin polyglutamylase complex subunit 2 Neighboring gene STARR-seq mESC enhancer starr_44077 Neighboring gene STARR-seq mESC enhancer starr_44078 Neighboring gene STARR-seq mESC enhancer starr_44080 Neighboring gene predicted gene, 32825 Neighboring gene CUGBP, Elav-like family member 4 Neighboring gene STARR-positive B cell enhancer ABC_E3225 Neighboring gene predicted gene 3227

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein hinderin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033532.4 → NP_001028704.2  protein hinderin isoform 1

      See identical proteins and their annotated locations for NP_001028704.2

      Status: VALIDATED

      Source sequence(s)
      AC124355, AC125104, AC144938
      UniProtKB/Swiss-Prot
      Q3TJX2, Q571M8, Q6NZK5
      Related
      ENSMUSP00000095248.4, ENSMUST00000097643.10
      Conserved Domains (1) summary
      pfam15369
      Location:92 → 414
      KIAA1328; uncharacterized protein KIAA1328

    2. NM_001405457.1 → NP_001392386.1  protein hinderin isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124355, AC125104, AC144938
      UniProtKB/TrEMBL
      E9QPX6
      Related
      ENSMUSP00000046227.8, ENSMUST00000036619.14

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      25301825..25600378
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317877.3 → XP_017173366.2  protein hinderin isoform X4

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    2. XM_030250422.2 → XP_030106282.1  protein hinderin isoform X7

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    3. XM_036161093.1 → XP_036016986.1  protein hinderin isoform X1

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    4. XM_036161094.1 → XP_036016987.1  protein hinderin isoform X2

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    5. XM_017317880.3 → XP_017173369.2  protein hinderin isoform X8

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    6. XM_036161096.1 → XP_036016989.1  protein hinderin isoform X9

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    7. XM_017317878.3 → XP_017173367.2  protein hinderin isoform X6

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    8. XM_017317882.3 → XP_017173371.2  protein hinderin isoform X11

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    9. XM_017317883.3 → XP_017173372.2  protein hinderin isoform X12

      Conserved Domains (1) summary
      pfam15369
      Location:173 → 495
      KIAA1328; Uncharacterized protein KIAA1328

    10. XM_036161097.1 → XP_036016990.1  protein hinderin isoform X10

      Conserved Domains (1) summary
      pfam15369
      Location:28 → 350
      KIAA1328; Uncharacterized protein KIAA1328

    11. XM_036161099.1 → XP_036016992.1  protein hinderin isoform X14

      Conserved Domains (1) summary
      pfam15369
      Location:28 → 350
      KIAA1328; Uncharacterized protein KIAA1328

    12. XM_036161095.1 → XP_036016988.1  protein hinderin isoform X3

      Conserved Domains (1) summary
      pfam15369
      Location:83 → 405
      KIAA1328; Uncharacterized protein KIAA1328

    13. XM_036161098.1 → XP_036016991.1  protein hinderin isoform X13

      Conserved Domains (1) summary
      pfam15369
      Location:1 → 211
      KIAA1328; Uncharacterized protein KIAA1328

    RNA

    1. XR_003952505.2 RNA Sequence

    2. XR_001782355.3 RNA Sequence

    3. XR_001782354.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NZK5.2 GenPept UniProtKB/Swiss-Prot:Q6NZK5

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