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    Lce1l late cornified envelope 1L [ Mus musculus (house mouse) ]

    Gene ID: 73730, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lce1lprovided by MGI
    Official Full Name
    late cornified envelope 1Lprovided by MGI
    Primary source
    MGI:MGI:1920980
    See related
    Ensembl:ENSMUSG00000046676 AllianceGenome:MGI:1920980
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110008K04Rik
    Summary
    Predicted to enable identical protein binding activity. Orthologous to several human genes including LCE1A (late cornified envelope 1A); LCE1B (late cornified envelope 1B); and LCE1C (late cornified envelope 1C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward stomach adult (RPKM 31.2) See more
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    Genomic context

    See Lce1l in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92757256..92758593, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92849949..92851286, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08315 Neighboring gene late cornified envelope 1K Neighboring gene keratinocyte expressed, proline-rich Neighboring gene STARR-seq mESC enhancer starr_08316 Neighboring gene KPRP N-terminal and LCE C-terminal like protein Neighboring gene late cornified envelope 3A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028628.2NP_082904.1  late cornified envelope 1L

      See identical proteins and their annotated locations for NP_082904.1

      Status: PROVISIONAL

      Source sequence(s)
      AK003585
      Consensus CDS
      CCDS38518.1
      UniProtKB/TrEMBL
      Q9D1G7
      Related
      ENSMUSP00000057762.5, ENSMUST00000054426.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92757256..92758593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)